Detailed information of SNP:
|
SNP ID:
sf0433027148(Gbrowse)
Chromosome: chr04 Position: 33027148 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 62.99% | 37.01% |
| All Indica | 798 | 87.72% | 12.28% |
| All Japonica | 496 | 19.56% | 80.44% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 18.51% | 81.49% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433027148 | G->A | LOC_Os04g55790(LOC_Os04g55790.1) | INTRON |