Detailed information of SNP:
|
SNP ID:
sf0433061628(Gbrowse)
Chromosome: chr04 Position: 33061628 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 90.97% | 9.03% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 496 | 86.29% | 13.71% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 86.53% | 13.47% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433061628 | A->T | LOC_Os04g55840(LOC_Os04g55840.1) | INTRON |