Detailed information of SNP:
|
SNP ID:
sf0433068442(Gbrowse)
Chromosome: chr04 Position: 33068442 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.60% | 41.40% |
| All Indica | 799 | 85.11% | 14.89% |
| All Japonica | 496 | 15.12% | 84.88% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 334 | 13.77% | 86.23% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433068442 | C->T | INTERGENIC | None |