Detailed information of SNP:
|
SNP ID:
sf0433137375(Gbrowse)
Chromosome: chr04 Position: 33137375 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 60.14% | 39.86% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 493 | 9.33% | 90.67% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 332 | 10.54% | 89.46% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433137375 | T->C | INTERGENIC | None |