Detailed information of SNP:
|
SNP ID:
sf0433153390(Gbrowse)
Chromosome: chr04 Position: 33153390 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 64.32% | 35.68% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 496 | 10.48% | 89.52% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 334 | 11.98% | 88.02% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433153390 | A->T | INTERGENIC | None |