Detailed information of SNP:
|
SNP ID:
sf0433161541(Gbrowse)
Chromosome: chr04 Position: 33161541 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 96.06% | 3.94% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 482 | 96.06% | 3.94% |
| Aus | 60 | 51.67% | 48.33% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 94.12% | 5.88% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433161541 | G->T | INTERGENIC | None |