Detailed information of SNP:
|
SNP ID:
sf0433165285(Gbrowse)
Chromosome: chr04 Position: 33165285 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 54.59% | 45.41% |
| All Indica | 798 | 92.73% | 7.27% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433165285 | C->T | INTERGENIC | None |