Detailed information of SNP:
|
SNP ID:
sf0433165920(Gbrowse)
Chromosome: chr04 Position: 33165920 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.74% | 49.26% |
| All Indica | 799 | 17.52% | 82.48% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 14.13% | 85.87% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 211 | 26.54% | 73.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433165920 | G->T | INTERGENIC | None |