Detailed information of SNP:
|
SNP ID:
sf0433168504(Gbrowse)
Chromosome: chr04 Position: 33168504 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 57.94% | 42.06% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433168504 | C->T | INTERGENIC | None |