Detailed information of SNP:
|
SNP ID:
sf0433208828(Gbrowse)
Chromosome: chr04 Position: 33208828 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 54.46% | 45.54% |
| All Indica | 796 | 92.59% | 7.41% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433208828 | T->C | INTERGENIC | None |