Detailed information of SNP:
|
SNP ID:
sf0433218299(Gbrowse)
Chromosome: chr04 Position: 33218299 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 57.25% | 42.75% |
| All Indica | 795 | 94.84% | 5.16% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433218299 | G->A | INTERGENIC | None |