Detailed information of SNP:
|
SNP ID:
sf0433219129(Gbrowse)
Chromosome: chr04 Position: 33219129 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 58.05% | 41.95% |
| All Indica | 798 | 95.61% | 4.39% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433219129 | A->G | INTERGENIC | None |