Detailed information of SNP:
|
SNP ID:
sf0433225113(Gbrowse)
Chromosome: chr04 Position: 33225113 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.19% | 42.81% |
| All Indica | 798 | 94.49% | 5.51% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433225113 | A->T | INTERGENIC | None |