Detailed information of SNP:
|
SNP ID:
sf0433225151(Gbrowse)
Chromosome: chr04 Position: 33225151 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 57.23% | 42.77% |
| All Indica | 798 | 94.61% | 5.39% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433225151 | A->C | INTERGENIC | None |