Detailed information of SNP:
|
SNP ID:
sf0433231549(Gbrowse)
Chromosome: chr04 Position: 33231549 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 54.66% | 45.34% |
| All Indica | 799 | 92.62% | 7.38% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433231549 | A->G | INTERGENIC | None |