Detailed information of SNP:
|
SNP ID:
sf0433236168(Gbrowse)
Chromosome: chr04 Position: 33236168 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 56.14% | 43.86% |
| All Indica | 798 | 92.86% | 7.14% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433236168 | T->C | INTERGENIC | None |