Detailed information of SNP:
|
SNP ID:
sf0433239427(Gbrowse)
Chromosome: chr04 Position: 33239427 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 54.98% | 45.02% |
| All Indica | 798 | 90.98% | 9.02% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 66 | 24.24% | 75.76% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433239427 | A->G | INTERGENIC | None |