Detailed information of SNP:
|
SNP ID:
sf0433413855(Gbrowse)
Chromosome: chr04 Position: 33413855 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1276 | 97.10% | 2.90% |
| All Indica | 765 | 95.42% | 4.58% |
| All Japonica | 402 | 100.00% | 0.00% |
| Aus | 56 | 100.00% | 0.00% |
| Indica I | 357 | 95.80% | 4.20% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 197 | 94.92% | 5.08% |
| Temperate Japonica | 278 | 100.00% | 0.00% |
| Tropical Japonica | 75 | 100.00% | 0.00% |
| Japonica Intermediate | 49 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433413855 | T->C | INTERGENIC | None |