Detailed information of SNP:
|
SNP ID:
sf0433439032(Gbrowse)
Chromosome: chr04 Position: 33439032 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 50.81% | 49.19% |
| All Indica | 798 | 81.83% | 18.17% |
| All Japonica | 497 | 9.66% | 90.34% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 87.17% | 12.83% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433439032 | T->C | INTERGENIC | None |