Detailed information of SNP:
|
SNP ID:
sf0433442409(Gbrowse)
Chromosome: chr04 Position: 33442409 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.49% | 49.51% |
| All Indica | 798 | 81.45% | 18.55% |
| All Japonica | 497 | 9.46% | 90.54% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433442409 | G->A | LOC_Os04g56400(LOC_Os04g56400.1) | INTRON |