Detailed information of SNP:
|
SNP ID:
sf0433452570(Gbrowse)
Chromosome: chr04 Position: 33452570 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 50.46% | 49.54% |
| All Indica | 797 | 20.33% | 79.67% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 13.10% | 86.90% |
| Indica II | 212 | 21.70% | 78.30% |
| Indica Intermediate | 211 | 31.75% | 68.25% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433452570 | C->T | LOC_Os04g56420(LOC_Os04g56420.1) | SNPs that introduce initiation codons |