Detailed information of SNP:
|
SNP ID:
sf0433453150(Gbrowse)
Chromosome: chr04 Position: 33453150 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.18% | 49.82% |
| All Indica | 799 | 19.90% | 80.10% |
| All Japonica | 497 | 90.34% | 9.66% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 12.80% | 87.20% |
| Indica II | 213 | 21.60% | 78.40% |
| Indica Intermediate | 211 | 30.81% | 69.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433453150 | G->A | LOC_Os04g56420(LOC_Os04g56420.1) | UTR_3_PRIME |