Detailed information of SNP:
|
SNP ID:
sf0433488909(Gbrowse)
Chromosome: chr04 Position: 33488909 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 54.24% | 45.76% |
| All Indica | 795 | 76.10% | 23.90% |
| All Japonica | 497 | 17.51% | 82.49% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 372 | 72.85% | 27.15% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433488909 | G->A | INTERGENIC | None |