Detailed information of SNP:
|
SNP ID:
sf0433520630(Gbrowse)
Chromosome: chr04 Position: 33520630 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 98.52% | 1.48% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433520630 | G->A | LOC_Os04g56520(LOC_Os04g56520.1) | UTR_5_PRIME |
| sf0433520630 | G->A | LOC_Os04g56520(LOC_Os04g56520.2) | UTR_5_PRIME |