Detailed information of SNP:
|
SNP ID:
sf0433574924(Gbrowse)
Chromosome: chr04 Position: 33574924 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1299 | 56.04% | 43.96% |
| All Indica | 699 | 91.99% | 8.01% |
| All Japonica | 493 | 8.52% | 91.48% |
| Aus | 54 | 38.89% | 61.11% |
| Indica I | 319 | 93.73% | 6.27% |
| Indica II | 197 | 89.34% | 10.66% |
| Indica Intermediate | 183 | 91.80% | 8.20% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 90 | 41.11% | 58.89% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433574924 | G->A | INTERGENIC | None |