Detailed information of SNP:



SNP ID: sf0433626370(Gbrowse)

Chromosome: chr04

Position: 33626370
Major allele: G

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1396 93.05% 6.95%
All Indica799 99.75% 0.25%
All Japonica476 80.25% 19.75%
Aus66 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica315 71.11% 28.89%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate67 97.01% 2.99%
Group VI/Aromatic13 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0433626370 T->G LOC_Os04g56700(LOC_Os04g56700.1) INTRON