Detailed information of SNP:
|
SNP ID:
sf0433723078(Gbrowse)
Chromosome: chr04 Position: 33723078 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 63.86% | 36.14% |
| All Indica | 794 | 98.49% | 1.51% |
| All Japonica | 487 | 12.32% | 87.68% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 327 | 3.98% | 96.02% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433723078 | C->T | INTERGENIC | None |