Detailed information of SNP:
|
SNP ID:
sf0433745450(Gbrowse)
Chromosome: chr04 Position: 33745450 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 92.45% | 7.55% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 496 | 79.44% | 20.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 70.66% | 29.34% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433745450 | T->G | LOC_Os04g56910(LOC_Os04g56910.1) | SNPs that introduce initiation codons |