Detailed information of SNP:
|
SNP ID:
sf0433754124(Gbrowse)
Chromosome: chr04 Position: 33754124 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 86.60% | 13.40% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 435 | 65.06% | 34.94% |
| Aus | 63 | 73.02% | 26.98% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 296 | 64.86% | 35.14% |
| Tropical Japonica | 85 | 75.29% | 24.71% |
| Japonica Intermediate | 54 | 50.00% | 50.00% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433754124 | C->T | INTERGENIC | None |