Detailed information of SNP:
|
SNP ID:
sf0433825480(Gbrowse)
Chromosome: chr04 Position: 33825480 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 69.14% | 30.86% |
| All Indica | 798 | 80.95% | 19.05% |
| All Japonica | 496 | 50.60% | 49.40% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 213 | 56.81% | 43.19% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 35.22% | 64.78% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433825480 | G->A | LOC_Os04g57060(LOC_Os04g57060.1) | INTRON |