Detailed information of SNP:
|
SNP ID:
sf0433827220(Gbrowse)
Chromosome: chr04 Position: 33827220 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 86.35% | 13.65% |
| All Indica | 796 | 80.15% | 19.85% |
| All Japonica | 496 | 93.75% | 6.25% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 91.69% | 8.31% |
| Indica II | 212 | 57.08% | 42.92% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 334 | 94.31% | 5.69% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433827220 | A->G | LOC_Os04g57060(LOC_Os04g57060.1) | Synonymous |