Detailed information of SNP:
|
SNP ID:
sf0433828213(Gbrowse)
Chromosome: chr04 Position: 33828213 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 91.47% | 8.53% |
| All Indica | 774 | 86.18% | 13.82% |
| All Japonica | 489 | 97.75% | 2.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 96.43% | 3.57% |
| Indica II | 204 | 65.69% | 34.31% |
| Indica Intermediate | 206 | 88.35% | 11.65% |
| Temperate Japonica | 330 | 98.48% | 1.52% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433828213 | C->A | INTERGENIC | None |