Detailed information of SNP:
|
SNP ID:
sf0433872894(Gbrowse)
Chromosome: chr04 Position: 33872894 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 72.10% | 27.90% |
| All Indica | 796 | 98.87% | 1.13% |
| All Japonica | 488 | 33.81% | 66.19% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 333 | 24.32% | 75.68% |
| Tropical Japonica | 90 | 46.67% | 53.33% |
| Japonica Intermediate | 65 | 64.62% | 35.38% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0433872894 | G->A | LOC_Os04g57150(LOC_Os04g57150.2) | Non-Synonymous SNP |
| sf0433872894 | G->A | LOC_Os04g57150(LOC_Os04g57150.1) | Non-Synonymous SNP |