Detailed information of SNP:
|
SNP ID:
sf0434086555(Gbrowse)
Chromosome: chr04 Position: 34086555 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 55.93% | 44.07% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 35.90% | 64.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434086555 | A->G | INTERGENIC | None |