Detailed information of SNP:
|
SNP ID:
sf0434102159(Gbrowse)
Chromosome: chr04 Position: 34102159 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 94.48% | 5.52% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 492 | 93.70% | 6.30% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 68.48% | 31.52% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434102159 | A->G | INTERGENIC | None |