Detailed information of SNP:
|
SNP ID:
sf0434145574(Gbrowse)
Chromosome: chr04 Position: 34145574 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 54.48% | 45.52% |
| All Indica | 787 | 94.79% | 5.21% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 368 | 95.65% | 4.35% |
| Indica II | 210 | 93.81% | 6.19% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434145574 | T->C | LOC_Os04g57660(LOC_Os04g57660.1) | Non-Synonymous SNP |