Detailed information of SNP:
|
SNP ID:
sf0434146127(Gbrowse)
Chromosome: chr04 Position: 34146127 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1245 | 80.24% | 19.76% |
| All Indica | 633 | 61.61% | 38.39% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 286 | 57.34% | 42.66% |
| Indica II | 178 | 70.79% | 29.21% |
| Indica Intermediate | 169 | 59.17% | 40.83% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434146127 | C->T | LOC_Os04g57660(LOC_Os04g57660.1) | Synonymous |