Detailed information of SNP:
|
SNP ID:
sf0434146498(Gbrowse)
Chromosome: chr04 Position: 34146498 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 62.44% | 37.56% |
| All Indica | 736 | 32.88% | 67.12% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 30.55% | 69.45% |
| Indica II | 195 | 36.41% | 63.59% |
| Indica Intermediate | 194 | 33.51% | 66.49% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434146498 | C->T | LOC_Os04g57660(LOC_Os04g57660.1) | Non-Synonymous SNP |