Detailed information of SNP:
|
SNP ID:
sf0434170072(Gbrowse)
Chromosome: chr04 Position: 34170072 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 54.45% | 45.55% |
| All Indica | 798 | 93.61% | 6.39% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434170072 | T->C | INTERGENIC | None |