Detailed information of SNP:
|
SNP ID:
sf0434172081(Gbrowse)
Chromosome: chr04 Position: 34172081 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 96.07% | 3.93% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 479 | 89.56% | 10.44% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 80 | 38.75% | 61.25% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434172081 | G->C | INTERGENIC | None |