Detailed information of SNP:
|
SNP ID:
sf0434175279(Gbrowse)
Chromosome: chr04 Position: 34175279 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 92.15% | 7.85% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 494 | 85.83% | 14.17% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434175279 | C->T | INTERGENIC | None |