Detailed information of SNP:
|
SNP ID:
sf0434190460(Gbrowse)
Chromosome: chr04 Position: 34190460 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 67.33% | 32.67% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 496 | 18.15% | 81.85% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 7.76% | 92.24% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434190460 | A->G | INTERGENIC | None |