Detailed information of SNP:
|
SNP ID:
sf0434190827(Gbrowse)
Chromosome: chr04 Position: 34190827 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1363 | 97.73% | 2.27% |
| All Indica | 771 | 97.54% | 2.46% |
| All Japonica | 477 | 98.11% | 1.89% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 362 | 98.62% | 1.38% |
| Indica II | 207 | 96.62% | 3.38% |
| Indica Intermediate | 202 | 96.53% | 3.47% |
| Temperate Japonica | 331 | 99.40% | 0.60% |
| Tropical Japonica | 80 | 95.00% | 5.00% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434190827 | A->C | INTERGENIC | None |