Detailed information of SNP:
|
SNP ID:
sf0434207088(Gbrowse)
Chromosome: chr04 Position: 34207088 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 91.72% | 8.28% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 492 | 86.99% | 13.01% |
| Aus | 66 | 48.48% | 51.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 90 | 34.44% | 65.56% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434207088 | C->T | INTERGENIC | None |