Detailed information of SNP:
|
SNP ID:
sf0434221657(Gbrowse)
Chromosome: chr04 Position: 34221657 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.05% | 44.95% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434221657 | A->C | LOC_Os04g57770(LOC_Os04g57770.1) | UTR_5_PRIME |