Detailed information of SNP:
|
SNP ID:
sf0434248716(Gbrowse)
Chromosome: chr04 Position: 34248716 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1360 | 80.51% | 19.49% |
| All Indica | 742 | 65.09% | 34.91% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 345 | 56.81% | 43.19% |
| Indica II | 203 | 77.83% | 22.17% |
| Indica Intermediate | 194 | 66.49% | 33.51% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434248716 | A->G | INTERGENIC | None |