Detailed information of SNP:
|
SNP ID:
sf0434308307(Gbrowse)
Chromosome: chr04 Position: 34308307 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1303 | 83.58% | 16.42% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 401 | 56.36% | 43.64% |
| Aus | 54 | 68.52% | 31.48% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 250 | 66.80% | 33.20% |
| Tropical Japonica | 86 | 11.63% | 88.37% |
| Japonica Intermediate | 65 | 75.38% | 24.62% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 36 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434308307 | C->T | LOC_Os04g57890(LOC_Os04g57890.1) | Non-Synonymous SNP |