Detailed information of SNP:
|
SNP ID:
sf0434342894(Gbrowse)
Chromosome: chr04 Position: 34342894 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.62% | 39.38% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 11.67% | 88.33% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434342894 | T->G | INTERGENIC | None |