Detailed information of SNP:
|
SNP ID:
sf0434343369(Gbrowse)
Chromosome: chr04 Position: 34343369 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 62.17% | 37.83% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 7.76% | 92.24% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434343369 | G->A | INTERGENIC | None |