Detailed information of SNP:
|
SNP ID:
sf0434366056(Gbrowse)
Chromosome: chr04 Position: 34366056 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 60.81% | 39.19% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 485 | 9.48% | 90.52% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 332 | 4.52% | 95.48% |
| Tropical Japonica | 92 | 4.35% | 95.65% |
| Japonica Intermediate | 61 | 44.26% | 55.74% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0434366056 | T->C | LOC_Os04g58010(LOC_Os04g58010.1) | Non-Synonymous SNP |